Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb1xjr1A.e21-27
Source: [PDB-id:chain] 1xjr:A (&rarr PDB)
Source: Information THE STRUCTURE OF A RIGOROUSLY CONSERVED RNA ELEMENT WITHIN THE SARS VIRUS GENOME
Source: Compound S2M RNA
Source: Resolution 2.70 ANGSTROMS.
Position (21, 27)
Primary structure ('_': anchors) _GAGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C1'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 4 6
4 6 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 4 Hoogsteen/O2' ?
3 2 5 O2'/Bifurcated ?
4 2 6 Hoogsteen/Sugar trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters