Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-1-Internal Loop pdb1xhpFA.n11-21
Source: [PDB-id:chain] 1xhp:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF THE EXTENDED U6 ISL AS OBSERVED IN THE U2/U6 COMPLEX FROM SACCHAROMYCES CEREVISIAE
Source: Compound U6 SNRNA
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (9, 24), (11, 21)
Primary structure ('_': anchors) _AU_-_C_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C4'-exo, 3: C4'-exo, 4: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 5 6
5 6 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 3 6 Watson-Crick/Watson-Crick cis y
3 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters