Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-5-Internal Loop pdb1xbpF9.n18-63
Source: [PDB-id:chain] 1xbp:9 (&rarr PDB)
Source: Information INHIBITION OF PEPTIDE BOND FORMATION BY PLEUROMUTILINS: THE STRUCTURE OF THE 50S RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH TIAMULIN
Source: Compound 5S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.50 ANGSTROMS.
Position (22, 59), (28, 54)
Primary structure ('_': anchors) _GAAA_-_GAACC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 5 12 &larr
4 9 10
5 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 7 Watson-Crick/O2' trans y
3 5 8 Watson-Crick/Watson-Crick cis y
4 5 9 Watson-Crick/Watson-Crick cis y
5 6 7 Watson-Crick/Watson-Crick cis
6 10 12 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters