Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-7-Internal Loop pdb1xbp10.n816-870
Source: [PDB-id:chain] 1xbp:0 (&rarr PDB)
Source: Information INHIBITION OF PEPTIDE BOND FORMATION BY PLEUROMUTILINS: THE STRUCTURE OF THE 50S RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH TIAMULIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (819, 867), (826, 859)
Primary structure ('_': anchors) _CUGUAG_-_CCGAAGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C4'-exo, 9: C4'-exo, 10: C2'-exo, 13: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		14: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 6 7 ↑
2 6 13 →
3 7 8 ↑
4 11 12 ↑
5 15 16 ↑
6 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 2 17 Bifurcated/Watson-Crick cis y
3 4 13 O2'/Bifurcated ?
4 5 12 Watson-Crick/O2' ?
5 6 12 O2'/Bifurcated ?
6 7 11 Watson-Crick/Watson-Crick cis
7 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters