Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-7-Internal Loop pdb1xbp10.n663-695
Source: [PDB-id:chain] 1xbp:0 (&rarr PDB)
Source: Information INHIBITION OF PEPTIDE BOND FORMATION BY PLEUROMUTILINS: THE STRUCTURE OF THE 50S RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH TIAMULIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (664, 694), (671, 686)
Primary structure ('_': anchors) _UUGAAA_-_CGGAGGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		11: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		15: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 5 6 ↑
4 5 13 →
5 6 7 ↑
6 9 10 ↑
7 10 11 ↑
8 13 14 ↑
9 14 16 ↑
10 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 3 13 Watson-Crick/Watson-Crick trans y
3 3 14 Watson-Crick/Watson-Crick cis y
4 4 12 O2'/Bifurcated ?
5 4 13 Bifurcated/O2' ?
6 5 11 Watson-Crick/O2' ?
7 5 12 O2'/Bifurcated ?
8 6 11 O2'/Bifurcated trans y
9 8 9 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters