Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-4-Internal Loop pdb1xbp10.n2629-2661
Source: [PDB-id:chain] 1xbp:0 (&rarr PDB)
Source: Information INHIBITION OF PEPTIDE BOND FORMATION BY PLEUROMUTILINS: THE STRUCTURE OF THE 50S RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH TIAMULIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (2630, 2660), (2635, 2655)
Primary structure ('_': anchors) _AUAA_-_GAAG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-exo, 10: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 4 5
3 4 9
4 5 6
5 7 8
6 9 11
7 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 3 9 Hoogsteen/Watson-Crick trans
3 5 8 Sugar/Watson-Crick trans y
4 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters