Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-2-6-6-8-Multiloop pdb1xbp10.m538-1208
Source: [PDB-id:chain] 1xbp:0 (&rarr PDB)
Source: Information INHIBITION OF PEPTIDE BOND FORMATION BY PLEUROMUTILINS: THE STRUCTURE OF THE 50S RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH TIAMULIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (543, 1203), (548, 631), (634, 772), (779, 1139), (1146, 1194)
Primary structure ('_': anchors) _GACU_-_GA_-_UUCUCC_-_GGAGCG_-_GUGCGGAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		8: C4'-exo, 9: C4'-exo, 10: C2'-exo, 22: C2'-exo, 26: C4'-exo, 30: C2'-exo, 31: C4'-exo, 32: C2'-exo, 33: C4'-exo, 36: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 31 &larr
3 3 34 →
4 7 9 &larr
5 8 9 ↑
6 11 12 ↑
7 15 16 ↑
8 19 20 ↑
9 21 22 ↑
10 22 23 ↑
11 23 24 ↑
12 24 25 ↑
13 25 26 ↑
14 25 30 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 36 Watson-Crick/Watson-Crick cis
2 2 33 O2'/Watson-Crick ?
3 2 34 Hoogsteen/Sugar trans
4 3 11 O2'/Watson-Crick ?
5 5 9 O2'/Watson-Crick ?
6 6 7 Watson-Crick/Watson-Crick cis
7 7 9 O2'/Bifurcated ?
8 10 11 Watson-Crick/Watson-Crick cis y
9 14 23 Watson-Crick/Watson-Crick cis y
10 16 21 Watson-Crick/Watson-Crick cis
11 18 19 Watson-Crick/Watson-Crick cis
12 24 30 Watson-Crick/Watson-Crick cis
13 26 27 Watson-Crick/Watson-Crick cis
14 27 29 Sugar/Hoogsteen trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters