Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'0-4-22-3-6-Multiloop pdb1xbp10.m43-397
Source: [PDB-id:chain] 1xbp:0 (&rarr PDB)
Source: Information INHIBITION OF PEPTIDE BOND FORMATION BY PLEUROMUTILINS: THE STRUCTURE OF THE 50S RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH TIAMULIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (44, 396), (45, 156), (161, 189), (212, 239), (243, 389)
Primary structure ('_': anchors) __-_GAAC_-_AGGAGAAGAAAGAGAAUUCGAU_-_UCA_-_UAAAUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 37: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 5 6 ↑
3 6 7 ↑
4 9 10 ↑
5 10 11 ↑
6 13 14 ↑
7 13 44 →
8 15 16 ↑
9 16 17 ↑
10 17 39 &larr
11 18 30 →
12 21 22 ↑
13 22 23 ↑
14 23 24 ↑
15 31 32 ↑
16 33 34 ↑
17 34 35 ↑
18 38 39 ↑
19 40 41 ↑
20 44 45 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 45 Watson-Crick/Watson-Crick cis
2 2 3 Watson-Crick/Watson-Crick cis
3 6 12 Watson-Crick/Watson-Crick cis y
4 7 11 Watson-Crick/Watson-Crick cis
5 7 44 Sugar/O2' ?
6 8 9 Watson-Crick/Watson-Crick cis
7 11 13 O2'/Sugar ?
8 15 32 O2'/Bifurcated ?
9 17 30 Sugar/O2' ?
10 17 40 O2'/Bifurcated ?
11 18 37 O2'/Watson-Crick ?
12 21 28 Watson-Crick/Watson-Crick cis
13 31 42 Watson-Crick/Watson-Crick trans y
14 32 33 Watson-Crick/Watson-Crick cis
15 33 42 Sugar/Bifurcated cis y
16 36 40 Hoogsteen/Watson-Crick trans y
17 37 38 Watson-Crick/Watson-Crick cis
18 41 42 Hoogsteen/Hoogsteen cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters