Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-5-Internal Loop pdb1x8wFA.n32-100
Source: [PDB-id:chain] 1x8w:A (&rarr PDB)
Source: Information STRUCTURE OF THE TETRAHYMENA RIBOZYME: BASE TRIPLE SANDWICH AND METAL ION AT THE ACTIVE SITE
Source: Compound TETRAHYMENA RIBOZYME RNA
FLIPPED INTERNAL
Source: Resolution 3.80 ANGSTROMS.
Position (26, 105), (32, 100)
Primary structure ('_': anchors) _ACAU_-_AACAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 11: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3 →
2 5 6 ↑
3 7 8 ↑
4 8 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 4 Sugar/Watson-Crick cis y
2 1 13 Watson-Crick/Watson-Crick cis
3 5 8 Watson-Crick/Watson-Crick cis y
4 6 7 Watson-Crick/Watson-Crick cis
5 11 12 C/O2' ?
6 11 13 Sugar/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters