Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-2-Internal Loop pdb1x8w1B.n16-114
Source: [PDB-id:chain] 1x8w:B (&rarr PDB)
Source: Information STRUCTURE OF THE TETRAHYMENA RIBOZYME: BASE TRIPLE SANDWICH AND METAL ION AT THE ACTIVE SITE
Source: Compound TETRAHYMENA RIBOZYME RNA
Source: Resolution 3.80 ANGSTROMS.
Position (17, 113), (21, 110)
Primary structure ('_': anchors) _AAA_-_AA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 7: C4'-exo, 9: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 7 &larr
3 3 4
4 3 8
5 6 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 4 5 Hoogsteen/Bifurcated cis y
3 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters