Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-1-Internal Loop pdb1w2bF0.n2086-2134
Source: [PDB-id:chain] 1w2b:0 (&rarr PDB)
Source: Information TRIGGER FACTOR RIBOSOME BINDING DOMAIN IN COMPLEX WITH 50S
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 3.50 ANGSTROMS.
Position (2084, 2137), (2086, 2134)
Primary structure ('_': anchors) _GG_-_A_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 6
2 3 4
3 5 6
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 3 Hoogsteen/O2' ?
2 1 7 Watson-Crick/Watson-Crick cis
3 3 6 O2'/Bifurcated trans
4 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters