Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb1w2bF0.n1545-1593
Source: [PDB-id:chain] 1w2b:0 (&rarr PDB)
Source: Information TRIGGER FACTOR RIBOSOME BINDING DOMAIN IN COMPLEX WITH 50S
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 3.50 ANGSTROMS.
Position (1549, 1589), (1554, 1583)
Primary structure ('_': anchors) _CGAAC_-_CAAC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-exo, 4: C4'-exo, 12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
12: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3
2 3 4
3 4 11
4 5 6
5 6 7
6 8 9
7 9 10
8 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 5 10 O2'/Bifurcated trans
3 7 8 Watson-Crick/Watson-Crick cis
4 11 12 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters