Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'13-Hairpin pdb1vsp1x.e34-48
Source: [PDB-id:chain] 1vsp:x (&rarr PDB)
Source: Information INTERACTIONS AND DYNAMICS OF THE SHINE-DALGARNO HELIX IN THE 70S RIBOSOME. THIS FILE, 1VSP, CONTAINS THE 50S RIBOSOME SUBUNIT. 30S RIBOSOME SUBUNIT IS IN THE FILE 2QNH
Source: Compound 5S LARGE SUBUNIT RIBOSOMAL RNA
Source: Resolution 3.83 ANGSTROMS.
Position (34, 48)
Primary structure ('_': anchors) _UCCCAUUCCGAAC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-endo, 11: C2'-exo, 12: C2'-exo, 15: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 11 &larr
2 5 6 ↑
3 6 11 →
4 9 10 ↑
5 12 13 ↑
6 13 14 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 4 15 O2'/Bifurcated ?
3 5 11 Watson-Crick/Watson-Crick cis
4 7 10 O2'/Watson-Crick ?
5 10 12 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters