Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Segment pdb1vsa1w.i2322-2337
Source: [PDB-id:chain] 1vsa:w (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A 70S RIBOSOME-TRNA COMPLEX REVEALS FUNCTIONAL INTERACTIONS AND REARRANGEMENTS. THIS FILE, 1VSA, CONTAINS THE 50S RIBOSOME SUBUNIT. 30S RIBOSOME SUBUNIT IS IN THE FILE 2OW8
Source: Compound 23S LARGE SUBUNIT RIBOSOMAL RNA
Source: Resolution 3.71 ANGSTROMS.
Position (2322, 2337)
Primary structure ('_': anchors) _AGAAGGGGGCCUGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C3'-exo, 3: C2'-exo, 4: C2'-endo, 5: C3'-exo, 7: C2'-exo, 9: C2'-exo, 11: C2'-exo, 13: C2'-exo, 14: C3'-exo, 15: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 4 →
2 4 6 ↑
3 6 7 ↑
4 7 8 ↑
5 8 9 ↑
6 9 10 ↑
7 10 11 ↑
8 14 16 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 4 Sugar/O2' ?
2 4 6 Hoogsteen/O2' ?
3 5 6 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters