Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb1vqoF0.n1135-1149
Source: [PDB-id:chain] 1vqo:0 (&rarr PDB)
Source: Information THE STRUCTURE OF CCPMN BOUND TO THE LARGE RIBOSOMAL SUBUNIT HALOARCULA MARISMORTUI
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 2.20 ANGSTROMS.
Position (1131, 1153), (1135, 1149)
Primary structure ('_': anchors) _ACC_-_GUG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-endo, 7: O4'-endo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 4 5
3 8 9 &larr
4 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis y
2 1 10 Watson-Crick/Watson-Crick cis
3 5 6 Watson-Crick/Watson-Crick cis y
4 8 9 O2'/Hoogsteen ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters