Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Segment pdb1vqk19.i75-81
Source: [PDB-id:chain] 1vqk:9 (&rarr PDB)
Source: Information THE STRUCTURE OF CCDA-PHE-CAP-BIO BOUND TO THE A SITE OF THE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Source: Compound 5S RIBOSOMAL RNA
Source: Resolution 2.30 ANGSTROMS.
Position (75, 81)
Primary structure ('_': anchors) _GAGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-endo, 4: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3 &larr
3 3 5
4 5 6
5 6 7
Tertiary structure: Base-pairs
(anchor pairs)
None
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters