Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1vqk10.e2252-2262
Source: [PDB-id:chain] 1vqk:0 (&rarr PDB)
Source: Information THE STRUCTURE OF CCDA-PHE-CAP-BIO BOUND TO THE A SITE OF THE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.30 ANGSTROMS.
Position (2252, 2262)
Primary structure ('_': anchors) _UCCCAACGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-endo, 6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 &larr
3 3 8 ↓
4 4 5 ↑
5 5 6 &larr
6 7 8 ↑
7 9 10 ↑
8 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 10 Bifurcated/O2' trans y
3 3 9 O2'/Bifurcated trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters