Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-3-Internal Loop pdb1vq610.n2353-2394
Source: [PDB-id:chain] 1vq6:0 (&rarr PDB)
Source: Information THE STRUCTURE OF C-HPMN AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.70 ANGSTROMS.
Position (2355, 2392), (2358, 2388)
Primary structure ('_': anchors) _CG_-_CUU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo, 5: C2'-endo, 6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		2: syn, 6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 2 5 ↓
3 3 4 ↑
4 7 8 ↑
5 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 3 Hoogsteen/Hoogsteen cis y
3 2 5 Watson-Crick/O2' ?
4 2 8 Watson-Crick/Hoogsteen cis y
5 3 8 Watson-Crick/Watson-Crick cis
6 4 5 Watson-Crick/Watson-Crick cis y
7 4 7 Watson-Crick/Watson-Crick cis
8 5 7 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters