Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1vq610.e2700-2708
Source: [PDB-id:chain] 1vq6:0 (&rarr PDB)
Source: Information THE STRUCTURE OF C-HPMN AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.70 ANGSTROMS.
Position (2700, 2708)
Primary structure ('_': anchors) _UACAAGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-endo, 2: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3 ↑
2 3 4 ↑
3 5 6 ↑
4 6 7 &larr
5 7 8 →
6 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 3 Hoogsteen/O2' ?
2 1 9 Watson-Crick/Watson-Crick cis
3 3 8 Watson-Crick/O2' cis y
4 4 7 Watson-Crick/O2' ?
5 6 7 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters