Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'19-Hairpin pdb1vp01B.e496-516
Source: [PDB-id:chain] 1vp0:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 1.50 ANGSTROMS.
Position (496, 516)
Primary structure ('_': anchors) _UGGCACCUUAUGCGUGUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 3 20 →
3 6 7 ↑
4 15 16 ↑
5 20 21 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 21 Watson-Crick/Watson-Crick cis
2 4 18 O2'/Bifurcated cis y
3 5 17 Watson-Crick/Watson-Crick cis
4 6 16 Watson-Crick/Watson-Crick cis y
5 7 15 Watson-Crick/Watson-Crick cis
6 8 11 O2'/Bifurcated ?
7 8 12 O2'/Bifurcated ?
8 8 15 Bifurcated/O2' cis y
9 11 12 O2'/Hoogsteen ?
10 17 18 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters