Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'18-Hairpin pdb1vos1A.e1434-1453
Source: [PDB-id:chain] 1vos:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 1.50 ANGSTROMS.
Position (1434, 1453)
Primary structure ('_': anchors) _GGGUAACCUACGGGAAGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C4'-exo, 6: C2'-endo, 7: C2'-exo, 9: C2'-exo, 10: C4'-exo, 12: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 13: syn, 16: syn
Tertiary structure: Stacked bases None
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 O2'/Bifurcated ?
2 1 20 Watson-Crick/Watson-Crick cis
3 2 20 Watson-Crick/O2' ?
4 3 5 O2'/Bifurcated ?
5 6 7 Hoogsteen/Sugar cis y
6 6 17 Hoogsteen/Sugar trans
7 7 16 O2'/Watson-Crick ?
8 8 15 Watson-Crick/Watson-Crick trans
9 15 16 Watson-Crick/O2' ?
10 17 19 Watson-Crick/O2' ?
11 18 19 O2'/Sugar ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters