Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1vfg1C.e12-20
Source: [PDB-id:chain] 1vfg:C (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF TRNA NUCLEOTIDYLTRANSFERASE COMPLEXED WITH A PRIMER TRNA AND AN INCOMING ATP ANALOG
Source: Compound RNA (75-MER)
Source: Resolution 2.80 ANGSTROMS.
Position (12, 20)
Primary structure ('_': anchors) _UUCGAUU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo, 4: C4'-exo, 5: C4'-exo, 6: C4'-exo, 8: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 &larr
3 4 5 &larr
4 5 6 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis y
2 2 9 Watson-Crick/Watson-Crick cis y
3 8 9 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters