Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'10-Hairpin pdb1vc51B.e48-59
Source: [PDB-id:chain] 1vc5:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE WILD TYPE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, IN EDTA SOLUTION
Source: Compound HEPATITIS DELTA VIRUS RIBOZYME
Source: Resolution 3.40 ANGSTROMS.
Position (48, 59)
Primary structure ('_': anchors) _AUUGCACUCC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C1'-exo, 6: C4'-exo, 9: C2'-endo, 10: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 2 12
4 7 8
5 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 6 7 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters