Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Segment pdb1vc01B.i38-46
Source: [PDB-id:chain] 1vc0:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN IMIDAZOLE AND SR2+ SOLUTION
Source: Compound HEPATITIS DELTA VIRUS RIBOZYME
Source: Resolution 2.50 ANGSTROMS.
Position (38, 46)
Primary structure ('_': anchors) _GGGCAAC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 4
3 4 5
4 6 7
5 7 8
6 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 6 Hoogsteen/O2' cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters