Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1u9s1A.e105-113
Source: [PDB-id:chain] 1u9s:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE SPECIFICITY DOMAIN OF RIBONUCLEASE P OF THE A-TYPE
Source: Compound RIBONUCLEASE P
Source: Resolution 2.90 ANGSTROMS.
Position (105, 113)
Primary structure ('_': anchors) _GUAAGAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		8: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 5 ↑
4 5 6 ↑
5 6 7 ↑
6 7 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 7 O2'/Bifurcated trans y
3 3 5 Hoogsteen/O2' ?
4 3 6 O2'/Watson-Crick ?
5 8 9 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters