Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-7-Internal Loop pdb1u6p1B.n45-70
Source: [PDB-id:chain] 1u6p:B (&rarr PDB)
Source: Information NMR STRUCTURE OF THE MLV ENCAPSIDATION SIGNAL BOUND TO THE NUCLEOCAPSID PROTEIN
Source: Compound 101-MER
Source: Resolution NOT APPLICABLE.
Position (48, 67), (52, 59)
Primary structure ('_': anchors) _GAA_-_UUCGGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 9: C4'-exo, 10: C4'-exo, 11: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		11: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 3 4 ↑
3 4 5 ↑
4 6 7 ↑
5 7 8 ↑
6 8 9 ↑
7 9 10 ↑
8 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 2 9 Watson-Crick/Watson-Crick cis
3 2 13 Bifurcated/O2' ?
4 3 7 Watson-Crick/Watson-Crick cis y
5 3 8 Watson-Crick/Watson-Crick cis
6 4 7 Watson-Crick/Watson-Crick cis
7 5 6 Watson-Crick/Watson-Crick cis
8 10 12 C/O2' cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters