Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-2-Internal Loop pdb1u6p1B.n2-29
Source: [PDB-id:chain] 1u6p:B (&rarr PDB)
Source: Information NMR STRUCTURE OF THE MLV ENCAPSIDATION SIGNAL BOUND TO THE NUCLEOCAPSID PROTEIN
Source: Compound 101-MER
Source: Resolution NOT APPLICABLE.
Position (5, 26), (8, 23)
Primary structure ('_': anchors) _UA_-_CU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C4'-exo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 5 6
5 6 7
6 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 2 7 Watson-Crick/Watson-Crick cis
3 3 6 Watson-Crick/Watson-Crick cis y
4 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters