Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-2-Internal Loop pdb1tlr1A.n8-17
Source: [PDB-id:chain] 1tlr:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF TETRALOOP RECEPTOR RNA, NMR, 20 STRUCTURES
Source: Compound RNA TETRALOOP RECEPTOR (5'-
Source: Resolution NOT APPLICABLE.
Position (4, 20), (8, 17)
Primary structure ('_': anchors) _UAA_-_AU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C2'-exo, 7: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 7 &larr
4 4 5
5 4 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Hoogsteen/Watson-Crick trans y
3 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters