Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-3-Internal Loop pdb1sm110.n812-875
Source: [PDB-id:chain] 1sm1:0 (&rarr PDB)
Source: Information COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.42 ANGSTROMS.
Position (813, 874), (816, 870)
Primary structure ('_': anchors) _CA_-_CGC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 3 7
3 5 6
4 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 7 Watson-Crick/Watson-Crick cis y
3 2 8 Watson-Crick/Watson-Crick cis y
4 3 6 Watson-Crick/Watson-Crick cis y
5 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters