Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-5-Internal Loop pdb1sm110.n222-230
Source: [PDB-id:chain] 1sm1:0 (&rarr PDB)
Source: Information COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.42 ANGSTROMS.
Position (215, 236), (222, 230)
Primary structure ('_': anchors) _UUAGUA_-_GAACC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 6 7 ↑
4 7 8 ↑
5 9 10 ↑
6 11 12 ↑
7 12 13 ↑
8 13 14 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 3 13 Bifurcated/O2' ?
3 3 14 Bifurcated/O2' ?
4 4 6 Hoogsteen/O2' ?
5 5 10 Watson-Crick/O2' ?
6 7 10 Sugar/Hoogsteen trans
7 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters