Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'0-4-11-3-3-6-Multiloop pdb1sm110.m43-397
Source: [PDB-id:chain] 1sm1:0 (&rarr PDB)
Source: Information COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.42 ANGSTROMS.
Position (44, 396), (45, 156), (161, 189), (201, 208), (212, 239), (243, 389)
Primary structure ('_': anchors) __-_GAAC_-_AGGAGAAGAAA_-_GAU_-_UCA_-_UAAAUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		15: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 5 6 ↑
3 6 7 ↑
4 9 10 ↑
5 10 11 ↑
6 13 38 →
7 14 15 ↑
8 15 16 ↑
9 16 17 ↑
10 17 33 &larr
11 27 28 ↑
12 32 33 ↑
13 34 35 ↑
14 38 39 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 39 Watson-Crick/Watson-Crick cis
2 2 3 Watson-Crick/Watson-Crick cis
3 7 11 Watson-Crick/Watson-Crick cis
4 7 38 Sugar/O2' ?
5 8 9 Watson-Crick/Watson-Crick cis
6 8 14 Sugar/O2' ?
7 11 13 O2'/Sugar ?
8 17 24 Sugar/O2' ?
9 17 34 O2'/Bifurcated ?
10 19 23 Sugar/Watson-Crick trans y
11 21 22 Watson-Crick/Watson-Crick cis
12 25 36 Watson-Crick/Watson-Crick trans y
13 26 27 Watson-Crick/Watson-Crick cis
14 27 36 O2'/Sugar ?
15 29 35 Sugar/O2' ?
16 31 32 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters