Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb1sm110.i1839-1862
Source: [PDB-id:chain] 1sm1:0 (&rarr PDB)
Source: Information COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.42 ANGSTROMS.
Position (1839, 1862)
Primary structure ('_': anchors) _UCCUAAGGUAGCGAAAUUCCUU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
19: C4'-exo, 20: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 11 12
3 12 13
4 13 14
5 15 19
6 15 24
7 20 21
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 8 9 Hoogsteen/O2' ?
2 16 17 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters