Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-3-Internal Loop pdb1s9sFA.n52-59
Source: [PDB-id:chain] 1s9s:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF MLV PSI SITE
Source: Compound MLV PSI ENCAPSIDATION SITE
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (48, 67), (52, 59)
Primary structure ('_': anchors) _UUCGGAA_-_GAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 4: C1'-exo, 5: C4'-exo, 12: C2'-exo, 13: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 5 6 ↑
3 5 13 →
4 6 7 ↑
5 8 9 ↑
6 10 11 ↑
7 11 12 ↑
8 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 2 13 Bifurcated/O2' ?
3 3 5 C/O2' cis y
4 6 13 Watson-Crick/Watson-Crick cis
5 7 12 Watson-Crick/Watson-Crick cis
6 8 11 Watson-Crick/Watson-Crick cis
7 8 12 Watson-Crick/Watson-Crick cis y
8 9 10 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters