Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-2-Internal Loop pdb1s9s1A.n2-29
Source: [PDB-id:chain] 1s9s:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF MLV PSI SITE
Source: Compound MLV PSI ENCAPSIDATION SITE
Source: Resolution NOT APPLICABLE.
Position (5, 26), (8, 23)
Primary structure ('_': anchors) _UA_-_CU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 5 6 ↑
5 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 2 6 Watson-Crick/Hoogsteen cis y
3 2 7 Watson-Crick/Watson-Crick cis
4 3 5 Watson-Crick/Hoogsteen cis y
5 3 6 Watson-Crick/Watson-Crick cis y
6 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters