Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb1s72F0.n938-992
Source: [PDB-id:chain] 1s72:0 (&rarr PDB)
Source: Information REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 2.40 ANGSTROMS.
Position (946, 984), (951, 978)
Primary structure ('_': anchors) _CCAAA_-_GUAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		7: C2'-endo, 12: C3'-exo, 13: C1'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 3 10 →
3 4 5 ↑
4 8 9 ↑
5 9 10 ↑
6 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 11 Hoogsteen/Watson-Crick trans
3 4 10 O2'/Bifurcated trans y
4 4 12 Bifurcated/O2' ?
5 5 9 Watson-Crick/Watson-Crick cis
6 6 7 Hoogsteen/Bifurcated cis
7 7 8 Watson-Crick/Watson-Crick cis
8 11 12 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters