Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-5-Internal Loop pdb1s1iF3.n957-1069
Source: [PDB-id:chain] 1s1i:3 (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. THIS FILE, 1S1I, CONTAINS 60S SUBUNIT. THE 40S RIBOSOMAL SUBUNIT IS IN FILE 1S1H.
Source: Compound 5.8S/25S RIBOSOMAL RNAILS: REPRESENTED BY THE ANALOGOUS MOLECULE OF H.
FLIPPED INTERNAL
Source: Resolution 1.70 ANGSTROMS.
Position (951, 1073), (957, 1069)
Primary structure ('_': anchors) _AAA_-_CGACC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 4 ↑
2 2 3 ↑
3 4 6 →
4 6 7 ↑
5 7 8 ↑
6 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 3 Bifurcated/O2' ?
2 1 8 O2'/Watson-Crick ?
3 1 12 Watson-Crick/Watson-Crick cis
4 4 7 Watson-Crick/Watson-Crick cis y
5 4 11 Hoogsteen/Watson-Crick trans
6 5 6 Watson-Crick/Watson-Crick cis
7 9 12 Bifurcated/O2' trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters