Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'15-Hairpin pdb1s1i13.e2869-2885
Source: [PDB-id:chain] 1s1i:3 (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. THIS FILE, 1S1I, CONTAINS 60S SUBUNIT. THE 40S RIBOSOMAL SUBUNIT IS IN FILE 1S1H.
Source: Compound 5.8S/25S RIBOSOMAL RNAILS: REPRESENTED BY THE ANALOGOUS MOLECULE OF H.
Source: Resolution 1.70 ANGSTROMS.
Position (2869, 2885)
Primary structure ('_': anchors) _UAGUACGAGAGGAAC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-endo, 4: C2'-endo, 14: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 &larr
3 3 5 →
4 4 13 ↓
5 6 7 ↑
6 6 14 →
7 7 8 ↑
8 9 10 ↑
9 10 11 ↑
10 11 12 ↑
11 12 13 ↑
12 14 15 ↑
13 15 16 ↑
14 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 2 16 Hoogsteen/Sugar trans y
3 3 15 O2'/Bifurcated trans
4 5 13 Watson-Crick/O2' ?
5 5 14 Hoogsteen/Watson-Crick trans
6 6 13 O2'/Bifurcated trans
7 7 12 Watson-Crick/Watson-Crick cis
8 8 10 O2'/Sugar ?
9 8 11 O2'/Bifurcated trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters