Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-7-Internal Loop pdb1s1hFA.n1097-1134
Source: [PDB-id:chain] 1s1h:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. THIS FILE, 1S1H, CONTAINS 40S SUBUNIT. THE 60S RIBOSOMAL SUBUNIT IS IN FILE 1S1I.
Source: Compound 18S RIBOSOMAL RNAILS: MODELLED AS ANALOGOUS MOLECULE OF T.
FLIPPED INTERNAL
Source: Resolution 1.70 ANGSTROMS.
Position (1103, 1128), (1111, 1121)
Primary structure ('_': anchors) _GGCACU_-_UUGCCAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 11 →
5 6 7 ↑
6 7 8 ↑
7 9 10 ↑
8 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis y
2 5 14 Watson-Crick/Watson-Crick cis y
3 5 16 Bifurcated/O2' ?
4 6 11 Sugar/Watson-Crick trans y
5 7 10 Watson-Crick/Watson-Crick cis y
6 8 9 Watson-Crick/Watson-Crick cis
7 11 13 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters