Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-4-Internal Loop pdb1s1h1A.n1393-1460
Source: [PDB-id:chain] 1s1h:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. THIS FILE, 1S1H, CONTAINS 40S SUBUNIT. THE 60S RIBOSOMAL SUBUNIT IS IN FILE 1S1I.
Source: Compound 18S RIBOSOMAL RNAILS: MODELLED AS ANALOGOUS MOLECULE OF T.
Source: Resolution 1.70 ANGSTROMS.
Position (1395, 1458), (1400, 1453)
Primary structure ('_': anchors) _GAGC_-_GUGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 10 &larr
3 3 4 ↑
4 3 11 →
5 4 5 ↑
6 5 6 ↑
7 6 8 →
8 7 8 ↑
9 8 9 ↑
10 9 10 ↑
11 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 2 11 Bifurcated/O2' trans y
3 3 10 O2'/Bifurcated trans
4 4 9 Watson-Crick/Watson-Crick cis
5 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters