Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-6-1-1-3-Multiloop pdb1s1h1A.m52-352
Source: [PDB-id:chain] 1s1h:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. THIS FILE, 1S1H, CONTAINS 40S SUBUNIT. THE 60S RIBOSOMAL SUBUNIT IS IN FILE 1S1I.
Source: Compound 18S RIBOSOMAL RNAILS: MODELLED AS ANALOGOUS MOLECULE OF T.
Source: Resolution 1.70 ANGSTROMS.
Position (54, 350), (57, 91), (98, 310), (312, 333), (335, 346)
Primary structure ('_': anchors) _AA_-_GGACGG_-_A_-_A_-_GCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C1'-exo, 8: C2'-endo, 14: C2'-endo, 20: C4'-exo, 22: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 23 →
2 4 6 →
3 9 10 ↑
4 11 12 ↑
5 12 14 →
6 15 17 →
7 15 20 ↓
8 16 17 ↑
9 17 18 ↑
10 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 23 Watson-Crick/Watson-Crick cis
2 3 6 O2'/Watson-Crick trans y
3 3 9 Watson-Crick/Hoogsteen trans y
4 3 10 Bifurcated/O2' ?
5 4 5 Watson-Crick/Watson-Crick cis
6 11 14 Watson-Crick/Watson-Crick cis
7 12 13 Watson-Crick/Watson-Crick cis
8 12 22 O2'/Sugar cis y
9 15 16 Watson-Crick/Watson-Crick cis
10 17 20 Watson-Crick/Watson-Crick cis
11 18 19 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters