Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'10-Hairpin pdb1s1h1A.e1334-1345
Source: [PDB-id:chain] 1s1h:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. THIS FILE, 1S1H, CONTAINS 40S SUBUNIT. THE 60S RIBOSOMAL SUBUNIT IS IN FILE 1S1I.
Source: Compound 18S RIBOSOMAL RNAILS: MODELLED AS ANALOGOUS MOLECULE OF T.
Source: Resolution 1.70 ANGSTROMS.
Position (1334, 1345)
Primary structure ('_': anchors) _AUCAGCCAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C4'-exo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 5 6
3 6 7
4 9 11
5 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 2 11 Watson-Crick/Watson-Crick cis
3 3 4 Bifurcated/O2' ?
4 3 9 Watson-Crick/Watson-Crick trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters