Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-5-Internal Loop pdb1ry1FA.n66-109
Source: [PDB-id:chain] 1ry1:A (&rarr PDB)
Source: Information STRUCTURE OF THE SIGNAL RECOGNITION PARTICLE INTERACTING WITH THE ELONGATION-ARRESTED RIBOSOME
Source: Compound ALU DOMAIN (SRP9, SRP14 + RNA)
FLIPPED INTERNAL
Source: Resolution 2.00 ANGSTROMS.
Position (70, 105), (76, 101)
Primary structure ('_': anchors) _AAA_-_GAACC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 6 →
3 3 4 ↑
4 7 8 ↑
5 7 10 &larr
6 8 9 ↑
7 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 2 11 Hoogsteen/Sugar trans
3 5 6 Watson-Crick/Watson-Crick cis
4 6 10 O2'/Bifurcated ?
5 7 8 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters