Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb1rfr1A.n1-30
Source: [PDB-id:chain] 1rfr:A (&rarr PDB)
Source: Information NMR STRUCTURE OF THE 30MER STEMLOOP-D OF COXSACKIEVIRAL RNA
Source: Compound STEMLOOP-D RNA OF THE 5'-CLOVERLEAF OF
Source: Resolution NOT APPLICABLE.
Position (5, 26), (9, 22)
Primary structure ('_': anchors) _UCU_-_UUU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 5 ↑
4 6 7 ↑
5 7 8 ↑
6 8 9 ↑
7 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 2 9 Watson-Crick/Watson-Crick cis
3 3 8 Watson-Crick/Watson-Crick cis
4 4 7 Watson-Crick/Watson-Crick cis
5 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters