Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Hairpin pdb1r4h1A.e3-8
Source: [PDB-id:chain] 1r4h:A (&rarr PDB)
Source: Information NMR SOLUTION STRUCTURE OF THE IIIC DOMAIN OF GB VIRUS B IRES ELEMENT
Source: Compound 5'-R(*GP*GP*GP*CP*AP*AP*GP*CP*CP*C)-3'
Source: Resolution NOT APPLICABLE.
Position (3, 8)
Primary structure ('_': anchors) _CAAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C3'-exo, 4: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 4 5 ↑
4 5 6 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
2 2 3 O2'/Watson-Crick ?
3 2 5 Bifurcated/Watson-Crick cis y
4 3 4 Hoogsteen/O2' ?
5 4 5 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters