Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-3-Internal Loop pdb1r2p1A.n1-34
Source: [PDB-id:chain] 1r2p:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF DOMAIN 5 FROM THE AI5(GAMMA) GROUP II INTRON
Source: Compound 34-MER
Source: Resolution NOT APPLICABLE.
Position (8, 27), (10, 23)
Primary structure ('_': anchors) _U_-_ACG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-exo, 6: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 5 6 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 C/Hoogsteen trans y
2 1 8 Watson-Crick/Watson-Crick cis y
3 3 4 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters