Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Segment pdb1qvg10.i34-41
Source: [PDB-id:chain] 1qvg:0 (&rarr PDB)
Source: Information STRUCTURE OF CCA OLIGONUCLEOTIDE BOUND TO THE TRNA BINDING SITES OF THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.90 ANGSTROMS.
Position (34, 41)
Primary structure ('_': anchors) _GAUGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-endo, 4: C2'-endo, 5: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 5
3 6 7
4 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 3 Watson-Crick/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters