Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1qtq1B.e11-21
Source: [PDB-id:chain] 1qtq:B (&rarr PDB)
Source: Information GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOG
Source: Compound RNA (TRNA GLN II )
Source: Resolution 2.25 ANGSTROMS.
Position (11, 21)
Primary structure ('_': anchors) _AAGCGGUAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 6: C2'-endo, 7: C2'-endo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 10 Bifurcated/O2' trans
3 3 9 O2'/Watson-Crick trans y
4 4 5 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters