Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-2-Internal Loop pdb1qa61D.n7-31
Source: [PDB-id:chain] 1qa6:D (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX
Source: Compound 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN
Source: Resolution 2.80 ANGSTROMS.
Position (9, 29), (12, 26)
Primary structure ('_': anchors) _UA_-_AU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C3'-exo, 3: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 4 6
3 5 6
4 6 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters