Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Segment pdb1q861A.i2229-2244
Source: [PDB-id:chain] 1q86:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF CCA-PHE-CAP-BIOTIN BOUND SIMULTANEOUSLY AT HALF OCCUPANCY TO BOTH THE A-SITE AND P- SITE OF THE THE 50S RIBOSOMAL SUBUNIT.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.00 ANGSTROMS.
Position (2229, 2244)
Primary structure ('_': anchors) _AAAAGAUAGCUUGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-endo, 4: C2'-endo, 5: C3'-exo, 6: C2'-exo, 13: C2'-endo, 14: C2'-endo, 15: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 4
2 4 6
3 6 7
4 7 8
5 8 9
6 9 10
7 10 11
8 11 12
9 14 16
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 4 Sugar/O2' ?
2 4 6 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters