Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1q2r1F.e7-15
Source: [PDB-id:chain] 1q2r:F (&rarr PDB)
Source: Information CHEMICAL TRAPPING AND CRYSTAL STRUCTURE OF A CATALYTIC TRNA GUANINE TRANSGLYCOSYLASE COVALENT INTERMEDIATE
Source: Compound 5'-R(*AP*GP*CP*AP*CP*GP*GP*CP*UP*(ROB)
Source: Resolution 2.90 ANGSTROMS.
Position (7, 15)
Primary structure ('_': anchors) _CUNUAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo, 3: C2'-endo, 4: unknown, 5: C3'-exo, 6: C2'-endo, 7: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: unknown, 6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 7 9 O2'/Sugar ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters